Image Analysis Project

🧠 Image Analysis Project: Brain Cell Counting

Brain cell counting using CellProfiler.

View Project

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In this project, we used CellProfiler to quantify brain cells from microscopy images. This approach allowed high-throughput, automated, and reproducible cell counting.

✅ Key Analysis Steps in CellProfiler:

• Image Preprocessing using ColorToGray module.
• Applied filters:
  • EnhanceEdges
  • GaussianFilter
  • ErodeImage
  • Closing
• Identified primary objects (brain cells) for quantification.
• Exported data for statistical analysis.

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📊 Example Results:

• Total cells detected: 1,245 cells per image (average).
• Increased cell density observed in specific brain regions under experimental conditions.

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You can learn more about CellProfiler here.